Package: rPanglaoDB 0.2.1

rPanglaoDB: Download and Merge Single-Cell RNA-Seq Data from the PanglaoDB Database

Download and merge labeled single-cell RNA-seq data from the PanglaoDB <https://panglaodb.se/> into a Seurat object.

Authors:Daniel Osorio [aut, cre], Marieke Kuijjer [aut], James J. Cai [aut]

rPanglaoDB_0.2.1.tar.gz
rPanglaoDB_0.2.1.zip(r-4.5)rPanglaoDB_0.2.1.zip(r-4.4)rPanglaoDB_0.2.1.zip(r-4.3)
rPanglaoDB_0.2.1.tgz(r-4.4-any)rPanglaoDB_0.2.1.tgz(r-4.3-any)
rPanglaoDB_0.2.1.tar.gz(r-4.5-noble)rPanglaoDB_0.2.1.tar.gz(r-4.4-noble)
rPanglaoDB_0.2.1.tgz(r-4.4-emscripten)
rPanglaoDB.pdf |rPanglaoDB.html
rPanglaoDB/json (API)

# Install 'rPanglaoDB' in R:
install.packages('rPanglaoDB', repos = c('https://dosorio.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/dosorio/rpanglaodb/issues

On CRAN:

data-integrationdata-miningrna-seqsingle-cellsingle-cell-rna-seq

4.38 score 25 stars 19 scripts 138 downloads 4 exports 148 dependencies

Last updated 1 years agofrom:01f058050c. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 23 2024
R-4.5-winNOTEOct 23 2024
R-4.5-linuxNOTEOct 23 2024
R-4.4-winNOTEOct 23 2024
R-4.4-macNOTEOct 23 2024
R-4.3-winNOTEOct 23 2024
R-4.3-macNOTEOct 23 2024

Exports:getMarkersgetSampleCompositiongetSampleListgetSamples

Dependencies:abindaskpassbase64encBHbitopsbslibcachemcaToolscliclustercodetoolscolorspacecommonmarkcowplotcpp11crayoncrosstalkcurldata.tabledeldirdigestdotCall64dplyrdqrngevaluatefansifarverfastDummiesfastmapfitdistrplusFNNfontawesomefsfuturefuture.applygenericsggplot2ggrepelggridgesglobalsgluegoftestgplotsgridExtragtablegtoolsherehighrhtmltoolshtmlwidgetshttpuvhttricaigraphirlbaisobandjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevalleidenlifecyclelistenvlmtestmagrittrMASSMatrixmatrixStatsmemoisemgcvmimeminiUImunsellnlmeopensslparallellypatchworkpbapplypillarpkgconfigplotlyplyrpngpolyclipprogressrpromisespurrrR6RANNrappdirsRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppHNSWRcppProgressRcppTOMLreshape2reticulaterlangrmarkdownROCRrprojrootRSpectraRtsnesassscalesscattermoresctransformSeuratSeuratObjectshinysitmosourcetoolsspspamspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.univarspatstat.utilsstringistringrsurvivalsystensortibbletidyrtidyselecttinytexutf8uwotvctrsviridisLitewithrxfunXMLxml2xtableyamlzoo