Package: rPanglaoDB 0.2.1

rPanglaoDB: Download and Merge Single-Cell RNA-Seq Data from the PanglaoDB Database

Download and merge labeled single-cell RNA-seq data from the PanglaoDB <https://panglaodb.se/> into a Seurat object.

Authors:Daniel Osorio [aut, cre], Marieke Kuijjer [aut], James J. Cai [aut]

rPanglaoDB_0.2.1.tar.gz
rPanglaoDB_0.2.1.zip(r-4.7)rPanglaoDB_0.2.1.zip(r-4.6)rPanglaoDB_0.2.1.zip(r-4.5)
rPanglaoDB_0.2.1.tgz(r-4.6-any)rPanglaoDB_0.2.1.tgz(r-4.5-any)
rPanglaoDB_0.2.1.tar.gz(r-4.7-any)rPanglaoDB_0.2.1.tar.gz(r-4.6-any)
rPanglaoDB_0.2.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
rPanglaoDB/json (API)

# Install 'rPanglaoDB' in R:

install.packages('rPanglaoDB', repos = c('https://dosorio.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/dosorio/rpanglaodb/issues

On CRAN:

data-integration data-mining rna-seq single-cell single-cell-rna-seq

4.45 score 27 stars 21 scripts 248 downloads 4 exports 144 dependencies

Last updated from:01f058050c. Checks:7 NOTE, 2 OK. Indexed: yes.

Target	Result	Time	Files	Syslog
linux-devel-x86_64	NOTE	245
source / vignettes	OK	239
linux-release-x86_64	NOTE	242
macos-release-arm64	NOTE	234
macos-oldrel-arm64	NOTE	236
windows-devel	NOTE	204
windows-release	NOTE	186
windows-oldrel	NOTE	186
wasm-release	OK	164

Exports:getMarkers getSampleComposition getSampleList getSamples

Dependencies:abind askpass base64enc BH bitops bslib cachem caTools cli cluster codetools commonmark cowplot cpp11 crosstalk curl data.table deldir digest dotCall64 dplyr dqrng evaluate farver fastDummies fastmap fitdistrplus FNN fontawesome fs future future.apply generics ggplot2 ggrepel ggridges globals glue goftest gplots gridExtra gtable gtools here highr htmltools htmlwidgets httpuv httr ica igraph irlba isoband jquerylib jsonlite KernSmooth knitr labeling later lattice lazyeval lifecycle listenv lmtest magrittr MASS Matrix matrixStats memoise mime miniUI nlme openssl otel parallelly patchwork pbapply pillar pkgconfig plotly plyr png polyclip progressr promises purrr R6 RANN rappdirs RColorBrewer Rcpp RcppAnnoy RcppArmadillo RcppEigen RcppHNSW RcppProgress RcppTOML reshape2 reticulate rlang rmarkdown ROCR rprojroot RSpectra Rtsne S7 sass scales scattermore sctransform Seurat SeuratObject shiny sitmo sourcetools sp spam spatstat.data spatstat.explore spatstat.geom spatstat.random spatstat.sparse spatstat.univar spatstat.utils stringi stringr survival sys tensor tibble tidyr tidyselect tinytex utf8 uwot vctrs viridisLite withr xfun XML xml2 xtable yaml zoo

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Get the list of samples from the panglaoDB database with a pattern of expression for a set of molecular markers.	getMarkers
Get the cell-type content for each sample from the panglaoDB database.	getSampleComposition
Get the sample list from the panglaoDB database.	getSampleList
Download the expression matrix and annotations from the panglaoDB database.	getSamples

Usage by other packages (reverse dependencies)